Maize Inflorescence
Toggle navigation
  • Information about Zea mays AGPv4. Click here for AGPv3
  • Home
  • About
      • About
      • Info
      • Team
      • Photos
      • Links
  • Outreach
  • Login
  • Convert AGPv3 AGPv4
  • Profile
    • Profile Display
    • Profile Search
    • Hierarchical Cluster
    • Heatmap
  • Sequence Analysis
    • Promoter Analysis
    • ChIP-seq Analysis
    • GO Term Restricted
    • BLAST search
    • SNP Annotation Restricted
    • Pathway analysis
  • Database
    • Interval Query
    • Gene list Query new
    • Gene Cluster
    • Keyword Search
    • Gene Network new
  • Genome Browser
  • MyGene Restricted
  • SNP in GWAS
  • SOP
  • Download
  • Outreach
  • Tutorial
  • Contact

Profile Display

 Information

It displays the gene expression values for the selected set of experiments.

 Data

Experiments in ramosa series

Experiment Label
Ear wild-type 1mmear.wt.1mm
Ear ramosa1 1mmear.ra1.1mm
Ear ramosa2 1mmear.ra2.1mm
Ear ramosa3 1mmear.ra3.1mm
Ear wild-type 2mmear.wt.2mm
Ear ramosa1 2mmear.ra1.2mm
Ear ramosa2 2mmear.ra2.2mm
Ear ramosa3 2mmear.ra3.2mm

Experiments in ear and tassel development series

Experiment Label
Tip of the earear.tip
Middle of the earear.mid
Base of the earear.base
Tassel at Stage 1tassel.stg1
Tassel at Stage 2tassel.stg2
Tassel at Stage 3tassel.stg3

Experiments in fasciated ear (fea4)

Experiment Label
Wild type ear at 2mmwt.2mm.ear
Fasciated ear at 2mmfea4.2mm.ear

Experiments in knotted1

Experiment Label
Wild type ear 2-5 mmwt.ear.2to5mm
Knotted1 ear 2-5 mmkn1.ear.2to5mm
Wild type tassel 2-5 mmwt.tassel.2to5mm
Knotted1 tassel 2-5 mmkn1.tassel.2to5mm

 Instructions

Steps to follow

  • Select the desired experiments using checkbox, the gene expression values for the selected experiments will be displayed in tabular format.
  • (optional) Click on Example set of gene ids. to populate the box with example set of gene ids
    OR type in the desired list of gene ids in the box with one gene id per line.
  • Click on Search (RPKM values) to get the actual gene expression values
    OR click on Search (Log2 of RPKM) to get the log2 value of gene expression values
  • Wait for the page to load with the expression values for the selected experiments in a tabular format
  • Click on any row of the table to see the graph showing the experiments on X-axis and expression values on Y-axis
    OR use the check box to select a list of genes and click Combine graph
    OR click on Combine all graph to depict expression values of all the genes in one single graph.

Select Experiments:

ear and tassel development series [select all]

ramosa series [unselect all]

fasciated ear4 (fea4) experiment [unselect all]

knotted1 [unselect all]

nod (in RPM) [select all]

List Gene ID(s) or description:

Example set of gene ids.