Heatmap

Information

Give a list of gene ids, this tool generates heatmap using the R method heatmap(). To generate a heatmap, the distance matrix is generated using R method dist() and hierarchical cluster analysis is performed using R method hclust().

Data

Experiments in ramosa series

Experiment	Label
Ear wild-type 1mm	ear.wt.1mm
Ear ramosa1 1mm	ear.ra1.1mm
Ear ramosa2 1mm	ear.ra2.1mm
Ear ramosa3 1mm	ear.ra3.1mm
Ear wild-type 2mm	ear.wt.2mm
Ear ramosa1 2mm	ear.ra1.2mm
Ear ramosa2 2mm	ear.ra2.2mm
Ear ramosa3 2mm	ear.ra3.2mm

Experiments in ear and tassel development series

Experiment	Label
Tip of the ear	ear.tip
Middle of the ear	ear.mid
Base of the ear	ear.base
Tassel at Stage 1	tassel.stg1
Tassel at Stage 2	tassel.stg2
Tassel at Stage 3	tassel.stg3

Experiments in fasciated ear (fea4)

Experiment	Label
Wild type ear at 2mm	wt.2mm.ear
Fasciated ear at 2mm	fea4.2mm.ear

Experiments in knotted1

Experiment	Label
Wild type ear 2-5 mm	wt.ear.2to5mm
Knotted1 ear 2-5 mm	kn1.ear.2to5mm
Wild type tassel 2-5 mm	wt.tassel.2to5mm
Knotted1 tassel 2-5 mm	kn1.tassel.2to5mm

Instructions

Steps to follow

Select the desired experiments using checkbox
Enter a list of gene ids in the box labeled Gene list or use the example list of gene ids that are already present in the box.
From the dropdown menu labeled Hierarchical cluster analysis, select the agglomeration method for hierarchical cluster analysis, the default is 'average'.
From the dropdown menu labeled Distance measurement, select the distance measure to generate the distance matrix, the default is 'euclidean'.
Wait for the page to load the image of the heatmap

ear and tassel development series [select all]

ramosa series [unselect all]

fasciated ear4 (fea4) experiment [unselect all]

knotted1 [unselect all]

nod (in RPM) [select all]