Maize Inflorescence
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Profile Search

 Information

This tool identifies the genes that correlate with the expression profile of the selected gene, using the R function cor().

 Data

Experiments in ramosa series

Experiment Label
Ear wild-type 1mmear.wt.1mm
Ear ramosa1 1mmear.ra1.1mm
Ear ramosa2 1mmear.ra2.1mm
Ear ramosa3 1mmear.ra3.1mm
Ear wild-type 2mmear.wt.2mm
Ear ramosa1 2mmear.ra1.2mm
Ear ramosa2 2mmear.ra2.2mm
Ear ramosa3 2mmear.ra3.2mm

Experiments in ear and tassel development series

Experiment Label
Tip of the earear.tip
Middle of the earear.mid
Base of the earear.base
Tassel at Stage 1tassel.stg1
Tassel at Stage 2tassel.stg2
Tassel at Stage 3tassel.stg3

Experiments in fasciated ear (fea4)

Experiment Label
Wild type ear at 2mmwt.2mm.ear
Fasciated ear at 2mmfea4.2mm.ear

Experiments in knotted1

Experiment Label
Wild type ear 2-5 mmwt.ear.2to5mm
Knotted1 ear 2-5 mmkn1.ear.2to5mm
Wild type tassel 2-5 mmwt.tassel.2to5mm
Knotted1 tassel 2-5 mmkn1.tassel.2to5mm

 Instructions

Steps to follow

  • Select the desired experiments using checkbox, the gene expression values for the selected experiments will be displayed in tabular format.
  • Enter a gene id in the box below Gene name
  • Select one of the three routines: Spearman, Kendal and Pearson rank correlations and the cutoff value.
    The default is Spearman rank correlation with a cutoff of more than equal to 0.9.
  • Click on Search to get all the genes that correlates with the gene of interest.
    OR click on Search (Log2) to get the log2 value of gene expression values
  • Wait for the page to load with the expression values for the selected experiments in a tabular format
  • Click on any row of the table to see the graph showing the experiments on X-axis and expression values on Y-axis
    OR use the check box to select a list of genes and click Combine graph
    OR click on Combine all graph to depict expression values of all the genes in one single graph.

Filter by Experiments:

ear and tassel development series [select all]

ramosa series [unselect all]

fasciated ear4 (fea4) experiment [unselect all]

knotted1 [unselect all]

nod (in RPM) [select all]

Gene name:


Correlation Cutoff:



Save as

.txt