BLAST

Information

BLAST program implemented here to perform BLAST sequence analysis of input sequence(s) against a specific plant dna or protein sequences.

BLAST: Altschul S.F., Gish W., Miller W., Myers E.W. and Lipman D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215: 403-410.

BLAST database preparation

All the plants dna and protein sequences are downloaded from Ensembl
These sequences are formatted using BLAST package to make it a database

Instructions

Steps to follow

Select the BLAST program from the dropdown menu.
Select a specific Plant sequence database to BLAST against.
Select a pre-defined e-value
Click on Example nucleotide sequence. or Example protein sequence. to populate the box with example sequences
OR fill the box with sequences in FASTA format.
Alternatively, you can also upload a FASTA file.
Click on Run BLAST
Wait for the page to load the actual BLAST output on the webpage.

Program
Database Info
E-value

Paste query sequence (raw or FASTA format)

Example nucleotide sequence. Example protein sequence

Or upload query sequence